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genesplicer programs  (Sophia Genetics)


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    Structured Review

    Sophia Genetics genesplicer programs
    Genesplicer Programs, supplied by Sophia Genetics, used in various techniques. Bioz Stars score: 97/100, based on 1558 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/programming/Alamut+Visual+Plus/pmc13692513-234-7-19
    Average 97 stars, based on 1558 article reviews
    genesplicer programs - by Bioz Stars, 2026-11
    97/100 stars

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    Related Articles

    Software:

    Article Title: Monoallelic and Biallelic FOXP4 Variants Cause Short Stature, Dysmorphic Features, Neurodevelopmental, Heart, and Congenital Abnormalities
    Article Snippet: .. Image is adopted from Alamut Visual Plus (v1.6.1) software by SOPHiA GENETICS. ..

    Article Title: Methods for detecting variants in next- generation sequencing genomic data
    Article Snippet: The proposed variant annotation module 223 also identified 345, annotated 346 and reported 350 the pathogenic Clinvar deletion variant rs80359642 as an included match of a patient DELINS mutation in the BRCA2 gene as an included match: DB Clinvar: rs80359642: c.7211_7212delAA Patient DELINS variant : c.7209_7212CAAA>GG wherein the star symbol ‘*’ indicates the position of a matched nucleotide. .. In another experiment, the proposed genomic data analyzer 220 has been embedded into the Sophia Genetics Data Driven Medicine (DDM) genomic analysis software workflow 220 and operated on a patient sample to identify variants of clinical relevance in the ARSD gene. ..

    Article Title: Molecular Profiling of Polish Pediatric Patients with Epilepsy: A Single-Center Diagnostic Experience Using Next-Generation Sequencing
    Article Snippet: .. Alamut VisualTM Plus software (https://www.sophiagenetics.com/platform/alamut-visual-plus/ (accessed on 18 January 2026)) was also used. ..

    Article Title: Schwartz-Jampel Syndrome Type 1: Compound Heterozygosity of Two Novel Variants
    Article Snippet: The sequencing was done on an Illumina NextSeq 500 platform using SOPHIA Clinical Exome Solution (SOPHiA GENETICS SA, Rue du Centre 136, Switzerland) and Illumina V2 chemicals (5200 Illumina Way, California 92122, USA). .. The Sophia-DDM-V5.2 bioinformatics analysis software was used to perform variant calling and data analysis. ..

    Article Title: Father and son with a pathogenic variant c.614dup p.(Gln206Thrfs*20) in the NR5A1 gene: a case report.
    Article Snippet: Results were confirmed through polymerase chain reaction (PCR) and targeted Sanger sequencing on an ABI 3130xl Genetic Analyzer (Applied Biosystems, Foster City, CA, USA) using a BigDye Terminator v3.1 Cycle Sequencing Kit (Applied Biosystems), following the manufacturer’s protocol in both directions. .. Electropherograms were analyzed using Chromas Lite MFC Application, v.2.6.6 (Technelysium, Australia), and Alamut Visual Plus software, v.1.6.1 (SOPHiA GENETICS, Switzerland). ..

    Article Title: Genetic analysis and clinical phenotype of pulmonary arterial hypertension in an Algerian population
    Article Snippet: All candidate CNVs were visually inspected and subsequently confirmed using an orthogonal method: multiplex ligation-dependent probe amplification (MLPA; kit Reference P093 HHT/HPAH, MRC Holland, Amsterdam, The Netherlands). .. The potential functional impact of missense variants was evaluated using Alamut Visual Plus software v1.7.1, which integrates multiple predictive algorithms, including CADD (phred-scaled), AlphaMissense and REVEL scores. ..

    Article Title: Genetic analysis and clinical phenotype of pulmonary arterial hypertension in an Algerian population.
    Article Snippet: All candidate CNVs were visually inspected and subsequently confirmed using an orthogonal method: multiplex ligationdependent probe amplification (MLPA; kit Reference P093 HHT/HPAH, MRC Holland, Amsterdam, The Netherlands). .. The potential functional impact of missense variants was evaluated using Alamut Visual Plus software v1.7.1, which integrates multiple predictive algorithms, including CADD (phred-scaled), AlphaMissense and REVEL scores. ..

    Article Title: Methods for detecting variants in next- generation sequencing genomic data
    Article Snippet: .. Experimental Data In one experiment, the proposed genomic data analyzer 220 has been embedded into the Sophia Genetics Data Driven Medicine (DDM) genomic analysis software workflow 220 and operated on a set of patient samples to identify variants of clinical relevance in the BRCA2 gene. ..

    Analysis:

    Article Title: Schwartz-Jampel Syndrome Type 1: Compound Heterozygosity of Two Novel Variants
    Article Snippet: The sequencing was done on an Illumina NextSeq 500 platform using SOPHIA Clinical Exome Solution (SOPHiA GENETICS SA, Rue du Centre 136, Switzerland) and Illumina V2 chemicals (5200 Illumina Way, California 92122, USA). .. The Sophia-DDM-V5.2 bioinformatics analysis software was used to perform variant calling and data analysis. ..

    Variant Assay:

    Article Title: Schwartz-Jampel Syndrome Type 1: Compound Heterozygosity of Two Novel Variants
    Article Snippet: The sequencing was done on an Illumina NextSeq 500 platform using SOPHIA Clinical Exome Solution (SOPHiA GENETICS SA, Rue du Centre 136, Switzerland) and Illumina V2 chemicals (5200 Illumina Way, California 92122, USA). .. The Sophia-DDM-V5.2 bioinformatics analysis software was used to perform variant calling and data analysis. ..

    Functional Assay:

    Article Title: Genetic analysis and clinical phenotype of pulmonary arterial hypertension in an Algerian population
    Article Snippet: All candidate CNVs were visually inspected and subsequently confirmed using an orthogonal method: multiplex ligation-dependent probe amplification (MLPA; kit Reference P093 HHT/HPAH, MRC Holland, Amsterdam, The Netherlands). .. The potential functional impact of missense variants was evaluated using Alamut Visual Plus software v1.7.1, which integrates multiple predictive algorithms, including CADD (phred-scaled), AlphaMissense and REVEL scores. ..

    Article Title: Genetic analysis and clinical phenotype of pulmonary arterial hypertension in an Algerian population.
    Article Snippet: All candidate CNVs were visually inspected and subsequently confirmed using an orthogonal method: multiplex ligationdependent probe amplification (MLPA; kit Reference P093 HHT/HPAH, MRC Holland, Amsterdam, The Netherlands). .. The potential functional impact of missense variants was evaluated using Alamut Visual Plus software v1.7.1, which integrates multiple predictive algorithms, including CADD (phred-scaled), AlphaMissense and REVEL scores. ..



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